Sun Java versions since 1.4 are IPv6 enabled, see e.g. Inet6Address (1.5/5.0) class. Hints are available in the Networking IPv6 User Guide for JDK/JRE 1.4 and 1.5 (5.0).
As of May 2007 it's not known that the Perl core itself already supports IPv6. It can be added by using following modules:
Anyway, some other modules exist for/with IPv6 support (e.g. Net::IP), search for ”IPv6” on http://search.cpan.org/.